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Report for Sequence Feature Glyma06g14820

Feature Type:gene_model
Chromosome:Gm06
Start:11615465
stop:11617470
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g14820
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G05270AT Annotation by Michelle Graham. TAIR10: Chalcone-flavanone isomerase family protein | chr5:1563543-1564827 FORWARD LENGTH=209 SoyBaseE_val: 3.00E-77ISS
GO:0009718GO-bp Annotation by Michelle Graham. GO Biological Process: anthocyanin-containing compound biosynthetic process SoyBaseN/AISS
GO:0009744GO-bp Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus SoyBaseN/AISS
GO:0009813GO-bp Annotation by Michelle Graham. GO Biological Process: flavonoid biosynthetic process SoyBaseN/AISS
GO:0010224GO-bp Annotation by Michelle Graham. GO Biological Process: response to UV-B SoyBaseN/AISS
GO:0042398GO-bp Annotation by Michelle Graham. GO Biological Process: cellular modified amino acid biosynthetic process SoyBaseN/AISS
GO:0080167GO-bp Annotation by Michelle Graham. GO Biological Process: response to karrikin SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0016872GO-mf Annotation by Michelle Graham. GO Molecular Function: intramolecular lyase activity SoyBaseN/AISS
GO:0045430GO-mf Annotation by Michelle Graham. GO Molecular Function: chalcone isomerase activity SoyBaseN/AISS
PF02431PFAM Chalcone-flavanone isomerase JGI ISS
UniRef100_C6T391UniRef Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=C6T391_SOYBN SoyBaseE_val: 1.00E-142ISS
UniRef100_G3LT02UniRef Annotation by Michelle Graham. Most informative UniRef hit: Chalcone isomerase n=1 Tax=Arachis hypogaea RepID=G3LT02_ARAHY SoyBaseE_val: 2.00E-107ISS

Proteins Associated with Glyma06g14820
LocusGene SymbolProtein Name
CHI4 chalcone isomerase 4

Expression Patterns of Glyma06g14820
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g14820
ParalogEvidenceComments
Glyma04g40030 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g14820 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g143000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g14820
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma06g14820
>Glyma06g14820.2   sequence type=transcript   gene model=Glyma06g14820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTGGCATGCCACTGTAAGATTAAACACTTGAGAGATTCATATTCCTGGTCTTACTATGAACTATGATGTGATGTTCAGATAAAAGGTTTAGGTAGTAGCCAACCTTAACAAATGAAAAGAAGTTAGCAATTGATAAAACTCACAGGTGCATCAACTTGCTCTACCTACCCACCTTATTTTCGGCCTTGTCAGGAACAAAGGGTCTAAATAAATAGCCTTACATAACGACTCTAATTAACTCACCCTTTTTGTAAAAACCTCTCTCAGAGTTTGCTCACCCCTACTCTTCTTCCAGTCTCTATCTCAATCTCCATCAAATTTAACTATGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTACCAAGATCACTACTACCAAGCCCCTATCTTTGCTTGGCCATGAAGTAGTAGGCCACTTGGACCAGTTCAAAGGAAAATCTGCAAAGGAGCTGGAAGATAATGAAGAGTTCTTCAATGCTCTCATTTCTGCCCCGGTGGAGAAGTTTATTAGACTTGTGGTGATCAAAGAGATCAAGGGTGCACAGTATGGGGTTCAGATTGAGACTGCGGTGAGGGATAGGTTGGCAGCTGAGGACAAATATGAGGAGGAAGAAGAAGAAGCTTTGGAAAAAGTTATTGAATTTTTCCAGTCCAAGTACTTCAAGAAACTTTCAGTGATCACATACCATTTCCCAGCAAATTCTGCCACTGCTGAGATTGTGGTATCTTTGGAGGGGAAAGAAGACTCCAAGTATGTGATAGAGAATGCCAATGTGGTAGAGGCCATCAAGAAATGGTACCTTGGTGGCTCAAGTGCGGTTTCTTCCTCAACCATTCAATCTCTGGCTAGCACTTTCTCGCAGGAGTTGTCCAAGTGAACATAACTTTGTATGGTGTAATAATCTTGGGGTCTGTGTTTTGTGTTGCTAAGTTGCAGTAATTGGAATTTTTCTCCACACAATGTTTTGCGGATTTCTGCTTTTGAACTTTTCGGAATAATGTTAATCTTGTGACTTGCCAAATTCTTAAGTGCTCTTTGTATGGTTATTCTTCATGCTGTTGGAACACATACATAATAAATCAACGCCCACACTACAAGTTTGAGTTTTTTACTTTTGATGGTGAATACATTT

>Glyma06g14820.3   sequence type=transcript   gene model=Glyma06g14820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTGGCATGCCACTGTAAGATTAAACACTTGAGAGATTCATATTCCTGGTCTTACTATGAACTATGATGTGATGTTCAGATAAAAGGTTTAGGTAGTAGCCAACCTTAACAAATGAAAAGAAGTTAGCAATTGATAAAACTCACAGGTGCATCAACTTGCTCTACCTACCCACCTTATTTTCGGCCTTGTCAGGAACAAAGGGTCTAAATAAATAGCCTTACATAACGACTCTAATTAACTCACCCTTTTTGTAAAAACCTCTCTCAGAGTTTGCTCACCCCTACTCTTCTTCCAGTCTCTATCTCAATCTCCATCAAATTTAACTAGAATCACCGACATGGAGATTCACTTCATCCATGTGAAATTCTATTCAATCGGGGTTTATTTGGAGCCAGAAGTAGTAGGCCACTTGGACCAGTTCAAAGGAAAATCTGCAAAGGAGCTGGAAGATAATGAAGAGTTCTTCAATGCTCTCATTTCTGCCCCGGTGGAGAAGTTTATTAGACTTGTGGTGATCAAAGAGATCAAGGGTGCACAGTATGGGGTTCAGATTGAGACTGCGGTGAGGGATAGGTTGGCAGCTGAGGACAAATATGAGGAGGAAGAAGAAGAAGCTTTGGAAAAAGTTATTGAATTTTTCCAGTCCAAGTACTTCAAGAAACTTTCAGTGATCACATACCATTTCCCAGCAAATTCTGCCACTGCTGAGATTGTGGTATCTTTGGAGGGGAAAGAAGACTCCAAGTATGTGATAGAGAATGCCAATGTGGTAGAGGCCATCAAGAAATGGTACCTTGGTGGCTCAAGTGCGGTTTCTTCCTCAACCATTCAATCTCTGGCTAGCACTTTCTCGCAGGAGTTGTCCAAGTGAACATAACTTTGTATGGTGTAATAATCTTGGGGTCTGTGTTTTGTGTTGCTAAGTTGCAGTAATTGGAATTTTTCTCCACACAATGTTTTGCGGATTTCTGCTTTTGAACTTTTCGGAATAATGTTAATCTTGTGACTTGCCAAATTCTTAAGTGCTCTTTGTATGGTTATTCTTCATGCTGTTGGAACACATACATAATAAATCAACGCCCACACTACAAGTTTGAGTTTTTTACTTTTGATGGTGAATACATTT
Coding sequences of Glyma06g14820
>Glyma06g14820.1   sequence type=CDS   gene model=Glyma06g14820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTACCAAGATCACTACTACCAAGCCCCTATCTTTGCTTGGCCATGGAATCACCGACATGGAGATTCACTTCATCCATGTGAAATTCTATTCAATCGGGGTTTATTTGGAGCCAGAAGTAGTAGGCCACTTGGACCAGTTCAAAGGAAAATCTGCAAAGGAGCTGGAAGATAATGAAGAGTTCTTCAATGCTCTCATTTCTGCCCCGGTGGAGAAGTTTATTAGACTTGTGGTGATCAAAGAGATCAAGGGTGCACAGTATGGGGTTCAGATTGAGACTGCGGTGAGGGATAGGTTGGCAGCTGAGGACAAATATGAGGAGGAAGAAGAAGAAGCTTTGGAAAAAGTTATTGAATTTTTCCAGTCCAAGTACTTCAAGAAACTTTCAGTGATCACATACCATTTCCCAGCAAATTCTGCCACTGCTGAGATTGTGGTATCTTTGGAGGGGAAAGAAGACTCCAAGTATGTGATAGAGAATGCCAATGTGGTAGAGGCCATCAAGAAATGGTACCTTGGTGGCTCAAGTGCGGTTTCTTCCTCAACCATTCAATCTCTGGCTAGCACTTTCTCGCAGGAGTTGTCCAAGTGA

>Glyma06g14820.2   sequence type=CDS   gene model=Glyma06g14820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTACCAAGATCACTACTACCAAGCCCCTATCTTTGCTTGGCCATGAAGTAGTAGGCCACTTGGACCAGTTCAAAGGAAAATCTGCAAAGGAGCTGGAAGATAATGAAGAGTTCTTCAATGCTCTCATTTCTGCCCCGGTGGAGAAGTTTATTAGACTTGTGGTGATCAAAGAGATCAAGGGTGCACAGTATGGGGTTCAGATTGAGACTGCGGTGAGGGATAGGTTGGCAGCTGAGGACAAATATGAGGAGGAAGAAGAAGAAGCTTTGGAAAAAGTTATTGAATTTTTCCAGTCCAAGTACTTCAAGAAACTTTCAGTGATCACATACCATTTCCCAGCAAATTCTGCCACTGCTGAGATTGTGGTATCTTTGGAGGGGAAAGAAGACTCCAAGTATGTGATAGAGAATGCCAATGTGGTAGAGGCCATCAAGAAATGGTACCTTGGTGGCTCAAGTGCGGTTTCTTCCTCAACCATTCAATCTCTGGCTAGCACTTTCTCGCAGGAGTTGTCCAAGTGA

>Glyma06g14820.3   sequence type=CDS   gene model=Glyma06g14820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGATTCACTTCATCCATGTGAAATTCTATTCAATCGGGGTTTATTTGGAGCCAGAAGTAGTAGGCCACTTGGACCAGTTCAAAGGAAAATCTGCAAAGGAGCTGGAAGATAATGAAGAGTTCTTCAATGCTCTCATTTCTGCCCCGGTGGAGAAGTTTATTAGACTTGTGGTGATCAAAGAGATCAAGGGTGCACAGTATGGGGTTCAGATTGAGACTGCGGTGAGGGATAGGTTGGCAGCTGAGGACAAATATGAGGAGGAAGAAGAAGAAGCTTTGGAAAAAGTTATTGAATTTTTCCAGTCCAAGTACTTCAAGAAACTTTCAGTGATCACATACCATTTCCCAGCAAATTCTGCCACTGCTGAGATTGTGGTATCTTTGGAGGGGAAAGAAGACTCCAAGTATGTGATAGAGAATGCCAATGTGGTAGAGGCCATCAAGAAATGGTACCTTGGTGGCTCAAGTGCGGTTTCTTCCTCAACCATTCAATCTCTGGCTAGCACTTTCTCGCAGGAGTTGTCCAAGTGA
Predicted protein sequences of Glyma06g14820
>Glyma06g14820.1   sequence type=predicted peptide   gene model=Glyma06g14820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATEEVLVDEITYPTKITTTKPLSLLGHGITDMEIHFIHVKFYSIGVYLEPEVVGHLDQFKGKSAKELEDNEEFFNALISAPVEKFIRLVVIKEIKGAQYGVQIETAVRDRLAAEDKYEEEEEEALEKVIEFFQSKYFKKLSVITYHFPANSATAEIVVSLEGKEDSKYVIENANVVEAIKKWYLGGSSAVSSSTIQSLASTFSQELSK*

>Glyma06g14820.2   sequence type=predicted peptide   gene model=Glyma06g14820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATEEVLVDEITYPTKITTTKPLSLLGHEVVGHLDQFKGKSAKELEDNEEFFNALISAPVEKFIRLVVIKEIKGAQYGVQIETAVRDRLAAEDKYEEEEEEALEKVIEFFQSKYFKKLSVITYHFPANSATAEIVVSLEGKEDSKYVIENANVVEAIKKWYLGGSSAVSSSTIQSLASTFSQELSK*

>Glyma06g14820.3   sequence type=predicted peptide   gene model=Glyma06g14820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEIHFIHVKFYSIGVYLEPEVVGHLDQFKGKSAKELEDNEEFFNALISAPVEKFIRLVVIKEIKGAQYGVQIETAVRDRLAAEDKYEEEEEEALEKVIEFFQSKYFKKLSVITYHFPANSATAEIVVSLEGKEDSKYVIENANVVEAIKKWYLGGSSAVSSSTIQSLASTFSQELSK*






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